Omics module
Index > Omics
Auto-generated documentation for Omics type annotations stubs module mypy-boto3-omics.
How to install
VSCode extension
Add AWS Boto3
extension to your VSCode and run AWS boto3: Quick Start
command.
Click Modify
and select boto3 common
and Omics
.
From PyPI with pip
Install boto3-stubs
for Omics
service.
# install with boto3 type annotations
python -m pip install 'boto3-stubs[omics]'
# Lite version does not provide session.client/resource overloads
# it is more RAM-friendly, but requires explicit type annotations
python -m pip install 'boto3-stubs-lite[omics]'
# standalone installation
python -m pip install mypy-boto3-omics
How to uninstall
Usage
Code samples can be found in Examples.
OmicsClient
Type annotations and code completion for boto3.client("omics")
as OmicsClient
boto3 documentation
Usage example
from boto3.session import Session
from mypy_boto3_omics.client import OmicsClient
def get_client() -> OmicsClient:
return Session().client("omics")
Paginators
Type annotations and code completion for paginators
from boto3.client("omics").get_paginator("...")
.
Usage example
from boto3.session import Session
from mypy_boto3_omics.paginator import ListAnnotationImportJobsPaginator
def get_list_annotation_import_jobs_paginator() -> ListAnnotationImportJobsPaginator:
return Session().client("omics").get_paginator("list_annotation_import_jobs"))
- ListAnnotationImportJobsPaginator
- ListAnnotationStoresPaginator
- ListReadSetActivationJobsPaginator
- ListReadSetExportJobsPaginator
- ListReadSetImportJobsPaginator
- ListReadSetsPaginator
- ListReferenceImportJobsPaginator
- ListReferenceStoresPaginator
- ListReferencesPaginator
- ListRunGroupsPaginator
- ListRunTasksPaginator
- ListRunsPaginator
- ListSequenceStoresPaginator
- ListVariantImportJobsPaginator
- ListVariantStoresPaginator
- ListWorkflowsPaginator
Waiters
Type annotations and code completion for waiters
from boto3.client("omics").get_waiter("...")
.
Usage example
from boto3.session import Session
from mypy_boto3_omics.waiter import AnnotationImportJobCreatedWaiter
def get_annotation_import_job_created_waiter() -> AnnotationImportJobCreatedWaiter:
return Session().client("omics").get_waiter("annotation_import_job_created")
- AnnotationImportJobCreatedWaiter
- AnnotationStoreCreatedWaiter
- AnnotationStoreDeletedWaiter
- ReadSetActivationJobCompletedWaiter
- ReadSetExportJobCompletedWaiter
- ReadSetImportJobCompletedWaiter
- ReferenceImportJobCompletedWaiter
- RunCompletedWaiter
- RunRunningWaiter
- TaskCompletedWaiter
- TaskRunningWaiter
- VariantImportJobCreatedWaiter
- VariantStoreCreatedWaiter
- VariantStoreDeletedWaiter
- WorkflowActiveWaiter
Literals
Type annotations for literals used in methods and schemas.
Usage example
from mypy_boto3_omics.literals import AnnotationImportJobCreatedWaiterName
def get_value() -> AnnotationImportJobCreatedWaiterName:
return "annotation_import_job_created"
- AnnotationImportJobCreatedWaiterName
- AnnotationStoreCreatedWaiterName
- AnnotationStoreDeletedWaiterName
- AnnotationTypeType
- EncryptionTypeType
- FileTypeType
- FormatToHeaderKeyType
- JobStatusType
- ListAnnotationImportJobsPaginatorName
- ListAnnotationStoresPaginatorName
- ListReadSetActivationJobsPaginatorName
- ListReadSetExportJobsPaginatorName
- ListReadSetImportJobsPaginatorName
- ListReadSetsPaginatorName
- ListReferenceImportJobsPaginatorName
- ListReferenceStoresPaginatorName
- ListReferencesPaginatorName
- ListRunGroupsPaginatorName
- ListRunTasksPaginatorName
- ListRunsPaginatorName
- ListSequenceStoresPaginatorName
- ListVariantImportJobsPaginatorName
- ListVariantStoresPaginatorName
- ListWorkflowsPaginatorName
- ReadSetActivationJobCompletedWaiterName
- ReadSetActivationJobItemStatusType
- ReadSetActivationJobStatusType
- ReadSetExportJobCompletedWaiterName
- ReadSetExportJobItemStatusType
- ReadSetExportJobStatusType
- ReadSetFileType
- ReadSetImportJobCompletedWaiterName
- ReadSetImportJobItemStatusType
- ReadSetImportJobStatusType
- ReadSetStatusType
- ReferenceFileType
- ReferenceImportJobCompletedWaiterName
- ReferenceImportJobItemStatusType
- ReferenceImportJobStatusType
- ReferenceStatusType
- RunCompletedWaiterName
- RunExportType
- RunLogLevelType
- RunRunningWaiterName
- RunStatusType
- SchemaValueTypeType
- StoreFormatType
- StoreStatusType
- TaskCompletedWaiterName
- TaskRunningWaiterName
- TaskStatusType
- VariantImportJobCreatedWaiterName
- VariantStoreCreatedWaiterName
- VariantStoreDeletedWaiterName
- WorkflowActiveWaiterName
- WorkflowEngineType
- WorkflowExportType
- WorkflowStatusType
- WorkflowTypeType
- OmicsServiceName
- ServiceName
- ResourceServiceName
- PaginatorName
- WaiterName
Typed dictionaries
Type annotations for typed dictionaries used in methods and schema.
Usage example
from mypy_boto3_omics.type_defs import ActivateReadSetFilterTypeDef
def get_value() -> ActivateReadSetFilterTypeDef:
return {
"createdAfter": ...,
}
- ActivateReadSetFilterTypeDef
- ActivateReadSetJobItemTypeDef
- ActivateReadSetSourceItemTypeDef
- AnnotationImportItemDetailTypeDef
- AnnotationImportItemSourceTypeDef
- AnnotationImportJobItemTypeDef
- ReferenceItemTypeDef
- SseConfigTypeDef
- BatchDeleteReadSetRequestRequestTypeDef
- ReadSetBatchErrorTypeDef
- ResponseMetadataTypeDef
- CancelAnnotationImportRequestRequestTypeDef
- CancelRunRequestRequestTypeDef
- CancelVariantImportRequestRequestTypeDef
- CreateRunGroupRequestRequestTypeDef
- WorkflowParameterTypeDef
- DeleteAnnotationStoreRequestRequestTypeDef
- DeleteReferenceRequestRequestTypeDef
- DeleteReferenceStoreRequestRequestTypeDef
- DeleteRunGroupRequestRequestTypeDef
- DeleteRunRequestRequestTypeDef
- DeleteSequenceStoreRequestRequestTypeDef
- DeleteVariantStoreRequestRequestTypeDef
- DeleteWorkflowRequestRequestTypeDef
- ExportReadSetDetailTypeDef
- ExportReadSetFilterTypeDef
- ExportReadSetJobDetailTypeDef
- ExportReadSetTypeDef
- FileInformationTypeDef
- VcfOptionsTypeDef
- WaiterConfigTypeDef
- GetAnnotationImportRequestRequestTypeDef
- GetAnnotationStoreRequestRequestTypeDef
- GetReadSetActivationJobRequestRequestTypeDef
- GetReadSetExportJobRequestRequestTypeDef
- GetReadSetImportJobRequestRequestTypeDef
- GetReadSetMetadataRequestRequestTypeDef
- SequenceInformationTypeDef
- GetReadSetRequestRequestTypeDef
- GetReferenceImportJobRequestRequestTypeDef
- ImportReferenceSourceItemTypeDef
- GetReferenceMetadataRequestRequestTypeDef
- GetReferenceRequestRequestTypeDef
- GetReferenceStoreRequestRequestTypeDef
- GetRunGroupRequestRequestTypeDef
- GetRunRequestRequestTypeDef
- GetRunTaskRequestRequestTypeDef
- GetSequenceStoreRequestRequestTypeDef
- GetVariantImportRequestRequestTypeDef
- VariantImportItemDetailTypeDef
- GetVariantStoreRequestRequestTypeDef
- GetWorkflowRequestRequestTypeDef
- ImportReadSetFilterTypeDef
- ImportReadSetJobItemTypeDef
- SourceFilesTypeDef
- ImportReferenceFilterTypeDef
- ImportReferenceJobItemTypeDef
- ListAnnotationImportJobsFilterTypeDef
- PaginatorConfigTypeDef
- ListAnnotationStoresFilterTypeDef
- ReadSetFilterTypeDef
- ReferenceStoreFilterTypeDef
- ReferenceFilterTypeDef
- ReferenceListItemTypeDef
- ListRunGroupsRequestRequestTypeDef
- RunGroupListItemTypeDef
- ListRunTasksRequestRequestTypeDef
- TaskListItemTypeDef
- ListRunsRequestRequestTypeDef
- RunListItemTypeDef
- SequenceStoreFilterTypeDef
- ListTagsForResourceRequestRequestTypeDef
- ListVariantImportJobsFilterTypeDef
- VariantImportJobItemTypeDef
- ListVariantStoresFilterTypeDef
- ListWorkflowsRequestRequestTypeDef
- WorkflowListItemTypeDef
- ReadOptionsTypeDef
- StartReadSetActivationJobSourceItemTypeDef
- StartReferenceImportJobSourceItemTypeDef
- StartRunRequestRequestTypeDef
- VariantImportItemSourceTypeDef
- TsvStoreOptionsTypeDef
- TagResourceRequestRequestTypeDef
- UntagResourceRequestRequestTypeDef
- UpdateAnnotationStoreRequestRequestTypeDef
- UpdateRunGroupRequestRequestTypeDef
- UpdateVariantStoreRequestRequestTypeDef
- UpdateWorkflowRequestRequestTypeDef
- ListReadSetActivationJobsRequestRequestTypeDef
- AnnotationStoreItemTypeDef
- CreateReferenceStoreRequestRequestTypeDef
- CreateSequenceStoreRequestRequestTypeDef
- CreateVariantStoreRequestRequestTypeDef
- ReferenceStoreDetailTypeDef
- SequenceStoreDetailTypeDef
- VariantStoreItemTypeDef
- BatchDeleteReadSetResponseTypeDef
- CreateReferenceStoreResponseTypeDef
- CreateRunGroupResponseTypeDef
- CreateSequenceStoreResponseTypeDef
- CreateVariantStoreResponseTypeDef
- CreateWorkflowResponseTypeDef
- DeleteAnnotationStoreResponseTypeDef
- DeleteVariantStoreResponseTypeDef
- EmptyResponseMetadataTypeDef
- GetReadSetActivationJobResponseTypeDef
- GetReadSetResponseTypeDef
- GetReferenceResponseTypeDef
- GetReferenceStoreResponseTypeDef
- GetRunGroupResponseTypeDef
- GetRunResponseTypeDef
- GetRunTaskResponseTypeDef
- GetSequenceStoreResponseTypeDef
- GetVariantStoreResponseTypeDef
- ListAnnotationImportJobsResponseTypeDef
- ListReadSetActivationJobsResponseTypeDef
- ListTagsForResourceResponseTypeDef
- StartAnnotationImportResponseTypeDef
- StartReadSetActivationJobResponseTypeDef
- StartReadSetExportJobResponseTypeDef
- StartReadSetImportJobResponseTypeDef
- StartReferenceImportJobResponseTypeDef
- StartRunResponseTypeDef
- StartVariantImportResponseTypeDef
- UpdateVariantStoreResponseTypeDef
- CreateWorkflowRequestRequestTypeDef
- GetWorkflowResponseTypeDef
- GetReadSetExportJobResponseTypeDef
- ListReadSetExportJobsRequestRequestTypeDef
- ListReadSetExportJobsResponseTypeDef
- StartReadSetExportJobRequestRequestTypeDef
- ReadSetFilesTypeDef
- ReferenceFilesTypeDef
- GetAnnotationImportRequestAnnotationImportJobCreatedWaitTypeDef
- GetAnnotationStoreRequestAnnotationStoreCreatedWaitTypeDef
- GetAnnotationStoreRequestAnnotationStoreDeletedWaitTypeDef
- GetReadSetActivationJobRequestReadSetActivationJobCompletedWaitTypeDef
- GetReadSetExportJobRequestReadSetExportJobCompletedWaitTypeDef
- GetReadSetImportJobRequestReadSetImportJobCompletedWaitTypeDef
- GetReferenceImportJobRequestReferenceImportJobCompletedWaitTypeDef
- GetRunRequestRunCompletedWaitTypeDef
- GetRunRequestRunRunningWaitTypeDef
- GetRunTaskRequestTaskCompletedWaitTypeDef
- GetRunTaskRequestTaskRunningWaitTypeDef
- GetVariantImportRequestVariantImportJobCreatedWaitTypeDef
- GetVariantStoreRequestVariantStoreCreatedWaitTypeDef
- GetVariantStoreRequestVariantStoreDeletedWaitTypeDef
- GetWorkflowRequestWorkflowActiveWaitTypeDef
- ReadSetListItemTypeDef
- GetReferenceImportJobResponseTypeDef
- GetVariantImportResponseTypeDef
- ListReadSetImportJobsRequestRequestTypeDef
- ListReadSetImportJobsResponseTypeDef
- ImportReadSetSourceItemTypeDef
- StartReadSetImportJobSourceItemTypeDef
- ListReferenceImportJobsRequestRequestTypeDef
- ListReferenceImportJobsResponseTypeDef
- ListAnnotationImportJobsRequestRequestTypeDef
- ListAnnotationImportJobsRequestListAnnotationImportJobsPaginateTypeDef
- ListReadSetActivationJobsRequestListReadSetActivationJobsPaginateTypeDef
- ListReadSetExportJobsRequestListReadSetExportJobsPaginateTypeDef
- ListReadSetImportJobsRequestListReadSetImportJobsPaginateTypeDef
- ListReferenceImportJobsRequestListReferenceImportJobsPaginateTypeDef
- ListRunGroupsRequestListRunGroupsPaginateTypeDef
- ListRunTasksRequestListRunTasksPaginateTypeDef
- ListRunsRequestListRunsPaginateTypeDef
- ListWorkflowsRequestListWorkflowsPaginateTypeDef
- ListAnnotationStoresRequestListAnnotationStoresPaginateTypeDef
- ListAnnotationStoresRequestRequestTypeDef
- ListReadSetsRequestListReadSetsPaginateTypeDef
- ListReadSetsRequestRequestTypeDef
- ListReferenceStoresRequestListReferenceStoresPaginateTypeDef
- ListReferenceStoresRequestRequestTypeDef
- ListReferencesRequestListReferencesPaginateTypeDef
- ListReferencesRequestRequestTypeDef
- ListReferencesResponseTypeDef
- ListRunGroupsResponseTypeDef
- ListRunTasksResponseTypeDef
- ListRunsResponseTypeDef
- ListSequenceStoresRequestListSequenceStoresPaginateTypeDef
- ListSequenceStoresRequestRequestTypeDef
- ListVariantImportJobsRequestListVariantImportJobsPaginateTypeDef
- ListVariantImportJobsRequestRequestTypeDef
- ListVariantImportJobsResponseTypeDef
- ListVariantStoresRequestListVariantStoresPaginateTypeDef
- ListVariantStoresRequestRequestTypeDef
- ListWorkflowsResponseTypeDef
- TsvOptionsTypeDef
- StartReadSetActivationJobRequestRequestTypeDef
- StartReferenceImportJobRequestRequestTypeDef
- StartVariantImportRequestRequestTypeDef
- StoreOptionsTypeDef
- ListAnnotationStoresResponseTypeDef
- ListReferenceStoresResponseTypeDef
- ListSequenceStoresResponseTypeDef
- ListVariantStoresResponseTypeDef
- GetReadSetMetadataResponseTypeDef
- GetReferenceMetadataResponseTypeDef
- ListReadSetsResponseTypeDef
- GetReadSetImportJobResponseTypeDef
- StartReadSetImportJobRequestRequestTypeDef
- FormatOptionsTypeDef
- CreateAnnotationStoreRequestRequestTypeDef
- CreateAnnotationStoreResponseTypeDef
- GetAnnotationStoreResponseTypeDef
- UpdateAnnotationStoreResponseTypeDef
- GetAnnotationImportResponseTypeDef
- StartAnnotationImportRequestRequestTypeDef